SNP Profiles of LCT EEN 37 /I   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCTTCTACCTGGTTCCAAGGCCAA
1._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
2._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
3._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
4._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
5._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
6._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
7._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
8._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
9._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
10._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
11._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
12._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
13._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
14._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
15._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
16._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
17._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
18._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
19._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
20._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
21._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
22._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
23._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
24._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
25._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
26._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
27._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
28._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
29._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
30._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
31._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
32._RUQ_156
CCGGCCTTCTACCTGGTTCCAAGGCCAA
33._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAA_CCAA
34._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
35._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
36._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
37._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
38._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
39._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
40._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAA_CCAA
41._RUQ_156
__CC____GG_CC_GG_AA
42._RUQ_156
_GGCCTT___GG____CCAA
43._GC-08-217-6-13
CCAGCGCTCTACCCGGTTCTAAAGCTAA
44._LCT_EEN_37_/I
CCAGCGCTCTACCCGGTTCTAAAGCTAA
45._RUQ_156
GGGGGGAAAGACAGCC__AAGGGGAA
 1516171819202122232425262728
_Input profile
CTATGGCTTTCCGTAATTCCGGGGCCAA
1._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
2._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
3._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
4._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
5._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
6._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
7._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
8._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
9._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
10._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
11._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
12._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
13._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
14._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
15._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
16._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
17._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
18._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
19._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
20._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
21._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
22._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
23._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
24._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
25._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
26._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
27._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
28._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
29._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
30._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
31._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
32._RUQ_156
CTATGGCTTTCCGTAATTCCGGGGCCAA
33._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
34._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
35._GC-08-218-6-14
CTATGGCTTTCCGT_TTCCGGGGCCAA
36._GC-08-218-6-14
CTATGGCTTTCCGT_TTCCGGGGCCAA
37._LCT_EEN_37_/I
CTATGGCTTTCCGT_TTCCGGGGCCAA
38._LCT_EEN_37_/I
CTATGGCTTTCCGT_TTCCGGGGCCAA
39._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
40._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
41._RUQ_156
_____CCGTAA_CC___AA
42._RUQ_156
____TTCCGT_TTCCCGGGCCAA
43._GC-08-217-6-13
CTATCGCTCTCGGTAACTCCCCGGCCAA
44._LCT_EEN_37_/I
CTATCGCTCTCGGTAACTCCCCGGCCAA
45._RUQ_156
AGATGGAGAAGGAC_AACCCGCC_AA
 293031323334353637383940  
_Input profile
AGAAATCCAGCCCCTTGGACATGGX_XX_X
1._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
2._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
3._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
4._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
5._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
6._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
7._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
8._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
9._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
10._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
11._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
12._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
13._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
14._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
15._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
16._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
17._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
18._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
19._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
20._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
21._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
22._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
23._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
24._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
25._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
26._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
27._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
28._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
29._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
30._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
31._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
32._RUQ_156
AGAAATCCAGCCCCTTGGACATGGX_XX_X
33._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
34._GC-08-217-6-13
AGAAATCCAG_CCTTGGACATGGX_XX_X
35._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
36._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
37._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
38._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
39._LCT_EEN_37_/I
AGAAATCCAG_CCTTGGACATGGX_XX_X
40._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
41._RUQ_156
____AG____AC__X_XX_X
42._RUQ_156
AG_ATCCAGCCCCTTGGAC__X_XX_X
43._GC-08-217-6-13
AGAGAACCAGCCCCCTGTCCAACGX_XX_X
44._LCT_EEN_37_/I
AGAGAACCAGCCCCCTGTCCAACGX_XX_X
45._RUQ_156
_AAATGGAGGGCCAACC_ATGGX_XX_X

Input profile: LCT_EEN_37_/I

 
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Mars Center for Cocoa Science, Brazil
Location: 4104 6
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._LCT_EEN_37_/I GC-08-217-6-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._LCT_EEN_37_/I GC-04-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

4._LCT_EEN_37_/I GC-04-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

5._LCT_EEN_37_/I GC-04-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._LCT_EEN_37_/I GC-04-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

7._LCT_EEN_37_/I GC-04-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._LCT_EEN_37_/I GC-08-217-6-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LCT_EEN_37_/I GC-08-217-6-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 10
 Dapeng Zhang, 2016

11._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._LCT_EEN_37_/I GC-08-218-6-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 4 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 9
 Dapeng Zhang, 2016

20._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 7
 Dapeng Zhang, 2016

21._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 6
 Dapeng Zhang, 2016

22._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 5
 Dapeng Zhang, 2016

23._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 3
 Dapeng Zhang, 2016

24._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 2
 Dapeng Zhang, 2016

25._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 1
 Dapeng Zhang, 2016

26._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 9
 Dapeng Zhang, 2016

27._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 2
 Dapeng Zhang, 2016

28._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 1
 Dapeng Zhang, 2016

29._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 8 > FP
 Dapeng Zhang, 2016

30._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 7 > FP
 Dapeng Zhang, 2016

31._LCT_EEN_37_/I

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 5 > FP
 Dapeng Zhang, 2016

32._LCT_EEN_37_/I RUQ_156

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

33._LCT_EEN_37_/I GC-08-217-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

34._LCT_EEN_37_/I GC-08-217-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

35._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

36._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

37._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 8
 Dapeng Zhang, 2016

38._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 4
 Dapeng Zhang, 2016

39._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 10
 Dapeng Zhang, 2016

40._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 6
 Dapeng Zhang, 2016

41._LCT_EEN_37_/I RUQ_156

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

42._LCT_EEN_37_/I RUQ_156

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._LCT_EEN_37_/I GC-08-217-6-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

44._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 5
 Dapeng Zhang, 2016

45._LCT_EEN_37_/I RUQ_156

45.6 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25